ICSB 2017 Tutorial - Full Agenda

Tutors Topic Slides
9:00-9:15 Martin Golebiewski
HITS, Heidelberg, Germany
Introduction: Modelling and Simulation Tools in Systems Biology Slides Intro
9:15-9:45 Martin Golebiewski
HITS, Heidelberg, Germany
COMBINE and its Standards: BioPax, SBGN, SBML, SED-ML, CellML, SBOL, NeuroML Slides COMBINE
9:45-10:20 Andreas Weidemann & Martin Golebiewski
HITS, Heidelberg, Germany
SABIO-RK – Reaction Kinetics Database Slides SABIO-RK
10:20-10:45 Coffee Break
10:45-12:45 Akira Funahashi, Noriko Hiroi & Yuta Tokuoka
Keio University, Yokohama, Japan
CellDesigner – Modeling Tool for Biochemical Networks Slides CellDesigner

Slides Hands-On

12:45-13:45 Lunch
13:45-15:45 Frank Bergmann, Jürgen Pahle, Sven Sahle, Ursula Kummer
Heidelberg University, Germany
Stefan Hoops
Virginia Tech, Blacksburg, VA, USA
Pedro Mendes
University of Connecticut Health Center, CT, USA
COPASI – Biochemical System Simulator

Slides COPASI 1

Data

Slides COPASI 2

15:45-16:00 Coffee Break
16:00-16:45 Ron Henkel, Andreas Weidemann & Martin Golebiewski
HITS, Heidelberg, Germany
Integrated Data and Model Management: FAIRDOM&SEEK Slides FAIRDOM

Slides Model Management

16:45-17:55 Leslie M. Loew
University of Connecticut Health Center, CT, USA
VCell - VirtualCell Slides VCell
17:55-18:00 Conclusions & Wrap-Up